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タンパク質班業績

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2017) 

Takatsuka R, Ito S, Iwai S, Kuraoka I. An assay to detect DNA-damaging agents that induce nucleotide excision-repairable DNA lesions in living human cells. 

Mutat Res. 2017 Aug;820:1-7. doi: 10.1016/j.mrgentox.2017.05.009. Epub 2017 May 22.

PMID:28676261

 

Tawarahara H, Kuraoka I, Iwai S. Facile preparation of a fluorescent probe to detect the cellular ability of nucleotide excision repair. Anal Biochem. 2017 Jun1;526:71-74. doi: 10.1016/j.ab.2017.03.023. Epub 2017 Mar 30. PubMed PMID:28366639.

 

Tadahiko Seo, Taketo Sakon, Shiori Nakazawa, Asuka Nishioka, Kohei Watanabe, Kaori Matsumoto, Mari Akasaka, Narumi Shioi, Hitoshi Sawada and Satohiko Araki, Haemorrhagic snake venom metalloproteases and human ADAMs cleave LRP5/6, which disrupts cell-cell adhesions in vitro and induces haemorrhage in vivo,
FEBS Journal, doi:10.1111/febs.14066, 2017

 

2016

Kim JI, Tohashi K, Iwai S, Kuraoka I. Inosine-specific ribonuclease activity of natural variants of human endonuclease V. FEBS Lett. 2016 Dec;590(23):4354-4360. doi: 10.1002/1873-3468.12470. Epub 2016 Nov 14. PubMed PMID: 27800608.

 

Yamamoto J, Takahata C, Kuraoka I, Hirota K, Iwai S. Chemical Incorporation of Chain-Terminating Nucleoside Analogs as 3'-Blocking DNA Damage and Their Removal by Human ERCC1-XPF Endonuclease. Molecules. 2016 Jun 11;21(6). pii: E766. doi:10.3390/molecules21060766. PubMed PMID: 27294910.

 

Kametani Y, Takahata C, Narita T, Tanaka K, Iwai S, Kuraoka I. FEN1 participates in repair of the 5'-phosphotyrosyl terminus of DNA single-strand breaks. Carcinogenesis. 2016 Jan;37(1):56-62. doi: 10.1093/carcin/bgv159. Epub 2015 Nov 17. PubMed PMID: 26581212.

 

2015

Barron GA, Goua M, Kuraoka I, Bermano G, Iwai S, Kong Thoo Lin P.

Bisnaphthalimidopropyl diaminodicyclohexylmethane induces DNA damage and repair instability in triple negative breast cancer cells via p21 expression. Chem Biol Interact. 2015 Dec 5;242:307-15. doi: 10.1016/j.cbi.2015.10.017. Epub 2015 Oct 21. PubMed PMID: 26499071.

 

Kuraoka I. Diversity of Endonuclease V: From DNA Repair to RNA Editing. Biomolecules. 2015 Sep 24;5(4):2194-206. doi: 10.3390/biom5042194. Review. PubMed PMID: 26404388; PubMed Central PMCID: PMC4693234.

 

Takahata C, Masuda Y, Takedachi A, Tanaka K, Iwai S, Kuraoka I. Repair synthesis step involving ERCC1-XPF participates in DNA repair of the Top1-DNA damage complex. Carcinogenesis. 2015 Aug;36(8):841-51. doi: 10.1093/carcin/bgv078. Epub 2015 May 29. PubMed PMID: 26025908.

 

Ito S, Kuraoka I. Epigenetic modifications in DNA could mimic oxidative DNA damage: A double-edged sword. DNA Repair (Amst). 2015 Aug;32:52-7. doi: 10.1016/j.dnarep.2015.04.013. Epub 2015 May 1. Review. PubMed PMID: 25956859.

 

Sonohara Y, Iwai S, Kuraoka I. An in vitro method for detecting genetic

toxicity based on inhibition of RNA synthesis by DNA lesions. Genes Environ. 2015 Aug 1;37:8. doi: 10.1186/s41021-015-0014-8. eCollection 2015. PubMed PMID: 27350805; PubMed Central PMCID: PMC4918014.

 

Guervilly JH, Takedachi A, Naim V, Scaglione S, Chawhan C, Lovera Y, Despras E, Kuraoka I, Kannouche P, Rosselli F, Gaillard PH. The SLX4 complex is a SUMO E3 ligase that impacts on replication stress outcome and genome stability. Mol Cell. 2015 Jan 8;57(1):123-37. doi: 10.1016/j.molcel.2014.11.014. Epub 2014 Dec 18. PubMed PMID: 25533188.

 

Narumi Shioi*, Ayumi Nishijima and Shigeyuki Terada,
Flavorase, a novel non-haemorrhagic metalloproteinase in Protobothrops flavoviridis venom, is a target molecule of small serum protein-3,
Journal of Biochemistry 158, 37-848, 2015

 

塩井 成留実
ヘビの毒について -福大の毒ヘビ女 からのメッセージ-, Nanakumano-mori,11, 47-55, 2015

Narumi Shioi(Aoki)*, Yoshitestu Handa, Seijiro Shioi, Shigeyuki Terada,
Structural and functional analysis of the endogenous peptide inhibiting snake venom, Peptide Science 2014, 29-32, 2015    (ISBN 978-4-931541-15-3)

 

2014

Fujikawa Y, Kawanishi M, Kuraoka I, Yagi T. Frequencies of mutagenic translesion DNA synthesis over cisplatin-guanine intra-strand crosslinks in lacZ  plasmids propagated in human cells. Mutat Res Genet Toxicol Environ Mutagen. 2014 Aug;770:23-8. doi: 10.1016/j.mrgentox.2014.05.006. Epub 2014 May 29. PubMed PMID: 25344160.

 

Toga T, Kuraoka I, Watanabe S, Nakano E, Takeuchi S, Nishigori C, Sugasawa K, Iwai S. Fluorescence detection of cellular nucleotide excision repair of damaged DNA. Sci Rep. 2014 Jul 4;4:5578. doi: 10.1038/srep05578. PubMed PMID: 24993089; PubMed Central PMCID: PMC4081890.

 

Shibutani T, Ito S, Toda M, Kanao R, Collins LB, Shibata M, Urabe M, Koseki H, Masuda Y, Swenberg JA, Masutani C, Hanaoka F, Iwai S, Kuraoka I. Guanine-5-carboxylcytosine base pairs mimic mismatches during DNA replication. Sci Rep. 2014 Jun 9;4:5220. doi: 10.1038/srep05220. PubMed PMID: 24910358; PubMed Central PMCID: PMC4048885.

 

Kametani Y, Iwai S, Kuraoka I. An RNA synthesis inhibition assay for detecting toxic substances using click chemistry. J Toxicol Sci. 2014Apr;39(2):293-9. PubMed PMID: 24646711.

 

Narumi Shioi*, Masanobu Deshimaru, and Shigeyuki Terada,
Structural analysis and characterization of new small serum proteins from the serum of a venomous snake (Gloydius blomhoffii),
Bioscience, Biotechnology, and Biochemistry 78, 3, 410-419, 2014

Seijiro Shioih, Narumi Shioi(Aoki),*, Yuki Okabe, Setsuko Ando, Yoshiharu Karube,
Preparation of a radiolabeled cationic peptide using an improved SUMO protein expression system, Peptide Science 2013,169-172, 2014

 

2013

Morita Y, Shibutani T, Nakanishi N, Nishikura K, Iwai S, Kuraoka I. Human endonuclease V is a ribonuclease specific for inosine-containing RNA. Nat Commun. 2013;4:2273. doi: 10.1038/ncomms3273. PubMed PMID: 23912718; PubMed Central PMCID: PMC3741642.

 

Toga T, Kuraoka I, Yasui A, Iwai S. A transfection reporter for the prevention of false-negative results in molecular beacon experiments. Anal Biochem. 2013 Sep 1;440(1):9-11. doi: 10.1016/j.ab.2013.04.027. Epub 2013 May 17. PubMed PMID: 23685051.

 

Arichi N, Yamamoto J, Takahata C, Sano E, Masuda Y, Kuraoka I, Iwai S. Strand breakage of a (6-4) photoproduct-containing DNA at neutral pH and its repair by the ERCC1-XPF protein complex. Org Biomol Chem. 2013 Jun 7;11(21):3526-34. doi:10.1039/c3ob00012e. Epub 2013 Apr 17. PubMed PMID: 23595295.

 

Yasuyoshi Tanaka, Sachiko Oyama, Shin-ichi Hori,Koya Ushio, Narumi Shioi, Shigeyuki Terada,and Masanobu Deshimal*,
Accelerated evolution of fetuin family proteins in Protobothrops flavoviridis (Habu snake) serum and discovery of an L1-like genomic element in the intronic sequence of a fetuin-encoding gene,
Bioscience, Biotechnology, and Biochemistry 77(3), 582-90, 2013

 

Narumi Shioi*, Eiki Ogawa, Yuki Mizukami, Shuhei Abe, Rieko Hayashi, Shigeyuki Terada, Small serum protein-1 changes the susceptibility of an apoptosis-inducing metalloproteinase HV1 to a metalloproteinase inhibitor in habu snake (T. flavoviridis)
Journal of Biochemistry 153(1), 121-129, 2013

 

Yasuyoshi Tanaka, Narumi Shioi, Shigeyuki Terada, and Masanobu Deshimaru* Structure organization and evolution of a cluster of small serum protein genes of Protobothrops flavoviridis snake, Fukuoka Univ. Sci. Rep. 43(1), 1-8, 2013.

 

Seijiro Shioi, Narumi Shioi(Aoki)*, Yoshiharu Karube, Biosynthesis of cationic peptide labeled with radioisotope, Peptide Science 2012, 151-154, 2013

 

2012

Hashiguchi K, Ozaki M, Kuraoka I, Saitoh H. Establishment of a human cell line stably overexpressing mouse Nip45 and characterization of Nip45 subcellular  localization. Biochem Biophys Res Commun. 2013 Jan 4;430(1):72-7. doi: 10.1016/j.bbrc.2012.11.020. Epub 2012 Nov 15. PubMed PMID: 23159618.

 

Kamakura N, Yamamoto J, Brooks PJ, Iwai S, Kuraoka I. Effects of

5',8-cyclodeoxyadenosine triphosphates on DNA synthesis. Chem Res Toxicol. 2012 Dec 17;25(12):2718-24. doi: 10.1021/tx300351p. Epub 2012 Nov 16. PubMed PMID:23146066.

 

Sassa A, Kamoshita N, Matsuda T, Ishii Y, Kuraoka I, Nohmi T, Ohta T, Honma M, Yasui M. Miscoding properties of 8-chloro-2'-deoxyguanosine, a hypochlorous acid-induced DNA adduct, catalysed by human DNA polymerases. Mutagenesis. 2013 Jan;28(1):81-8. doi: 10.1093/mutage/ges056. Epub 2012 Oct 17. PubMed PMID:23076070.

 

Nakanishi N, Fukuoh A, Kang D, Iwai S, Kuraoka I. Effects of DNA lesions on the transcription reaction of mitochondrial RNA polymerase: implications for bypass RNA synthesis on oxidative DNA lesions. Mutagenesis. 2013 Jan;28(1):117-23. doi: 10.1093/mutage/ges060. Epub 2012 Oct 10. PubMed PMID:23053822.

 

Punchihewa C, Inoue A, Hishiki A, Fujikawa Y, Connelly M, Evison B, Shao Y,Heath R, Kuraoka I, Rodrigues P, Hashimoto H, Kawanishi M, Sato M, Yagi T, Fujii N. Identification of small molecule proliferating cell nuclear antigen (PCNA)inhibitor that disrupts interactions with PIP-box proteins and inhibits DNA replication. J Biol Chem. 2012 Apr 20;287(17):14289-300. doi:10.1074/jbc.M112.353201. Epub 2012 Mar 1. PubMed PMID: 22383522; PubMed Central PMCID: PMC3340206.

 

Tan LJ, Saijo M, Kuraoka I, Narita T, Takahata C, Iwai S, Tanaka K. Xeroderma pigmentosum group F protein binds to Eg5 and is required for proper mitosis: implications for XP-F and XFE. Genes Cells. 2012 Mar;17(3):173-85. doi:10.1111/j.1365-2443.2012.01582.x. PubMed PMID: 22353549.

 

2011

Morita Y, Iwai S, Kuraoka I. A method for detecting genetic toxicity using

the RNA synthesis response to DNA damage. J Toxicol Sci. 2011 Oct;36(5):515-21. PubMed PMID: 22008527.

 

Horibata K, Saijo M, Bay MN, Lan L, Kuraoka I, Brooks PJ, Honma M, Nohmi T, Yasui A, Tanaka K. Mutant Cockayne syndrome group B protein inhibits repair of DNA topoisomerase I-DNA covalent complex. Genes Cells. 2011 Jan;16(1):101-14. doi: 10.1111/j.1365-2443.2010.01467.x. Epub 2010 Dec 9. PubMed PMID: 21143350.

 

Narumi SHIOI*, Masaaki NARAZAKI, and Shigeyuki TERADA
Novel function of antihemorrhagic factor HSF as an SSP-binding protein in Habu
(Trimeresurus flavoviridis) serum,
Fukuoka Univ. Sci. Rep., 41(1), 177-184, 2011.

 

Narumi SHIOI* and Shigeyuki TeradA,
Isolation and characterization of a novel subunit of phospholipase A2 inhibitor in the serum of Trimeresurus flavoviridis

Fukuoka Univ. Sci. Rep., 41, 185-193, 2011.

 

2010

Kashiwagi S, Kuraoka I, Fujiwara Y, Hitomi K, Cheng QJ, Fuss JO, Shin DS, Masutani C, Tainer JA, Hanaoka F, Iwai S. Characterization of a Y-Family DNA Polymerase eta from the Eukaryotic Thermophile Alvinella pompejana. J Nucleic Acids. 2010 Sep 20;2010. pii: 701472. doi: 10.4061/2010/701472. PubMed PMID: 20936172; PubMed Central PMCID: PMC2945680.

 

Ito S, Tan LJ, Andoh D, Narita T, Seki M, Hirano Y, Narita K, Kuraoka I,

Hiraoka Y, Tanaka K. MMXD, a TFIIH-independent XPD-MMS19 protein complex involved

in chromosome segregation. Mol Cell. 2010 Aug 27;39(4):632-40. doi:

10.1016/j.molcel.2010.07.029. PubMed PMID: 20797633.

 

Hasegawa M, Iwai S, Kuraoka I. A non-isotopic assay uses bromouridine and RNA synthesis to detect DNA damage responses. Mutat Res. 2010 Jun 17;699(1-2):62-6. doi: 10.1016/j.mrgentox.2010.04.002. Epub 2010 Apr 13. PubMed PMID: 20394837.

 

Matsumoto N, Toga T, Hayashi R, Sugasawa K, Katayanagi K, Ide H, Kuraoka I, Iwai S. Fluorescent probes for the analysis of DNA strand scission in base excision repair. Nucleic Acids Res. 2010 Apr;38(7):e101. doi: 10.1093/nar/gkq022. Epub 2010 Jan 27. PubMed PMID: 20110254; PubMed Central PMCID: PMC2853145.

 

Chijiwa S, Masutani C, Hanaoka F, Iwai S, Kuraoka I. Polymerization by DNA

polymerase eta is blocked by cis-diamminedichloroplatinum(II) 1,3-d(GpTpG)

cross-link: implications for cytotoxic effects in nucleotide excision

repair-negative tumor cells. Carcinogenesis. 2010 Mar;31(3):388-93. doi:

10.1093/carcin/bgp316. Epub 2009 Dec 16. PubMed PMID: 20015866.

 

2009

Matsumoto N, Hayashi R, Himoto M, Kuraoka I, Morita S, Hagiwara F, Katayanagi K, Ide H, Iwai S. Fluorescence detection of the endonuclease III reaction using modified oligonucleotides. Nucleic Acids Symp Ser (Oxf). 2009;(53):213-4. doi:10.1093/nass/nrp107. PubMed PMID: 19749336.

 

Fukuoh A, Ohgaki K, Hatae H, Kuraoka I, Aoki Y, Uchiumi T, Jacobs HT, Kang D.DNA conformation-dependent activities of human mitochondrial RNA polymerase. Genes Cells. 2009 Aug;14(8):1029-42. doi: 10.1111/j.1365-2443.2009.01328.x. Epub 2009 Jul 14. PubMed PMID: 19624753.

 

Ohba T, Kometani T, Shoji F, Yano T, Yoshino I, Taguchi K, Kuraoka I, Oda S, Maehara Y. Expression of an X-family DNA polymerase, pol lambda, in the respiratory epithelium of non-small cell lung cancer patients with habitual smoking. Mutat Res. 2009 Jun-Jul;677(1-2):66-71. doi: 10.1016/j.mrgentox.2009.05.008. Epub 2009 May 23. Erratum in: Mutat Res. 2009 Sep-Oct;679(1-2):88. Ichiro, Yoshino [corrected to Yoshino, Ichiro]. PubMed PMID:19467344.

 

Narumi Aoki*, Masanobu Deshimaru, Kenji Kihara, Shigeyuki Terada,
Snake fetuin: Isolation and structural analysis of new fetuin family proteins from the sera of venomous snakes.

Toxicon, 54, 481-490, 2009

 

Yuki Mizoe, Narumi Shioi (Aoki), Shigeyuki Terada, Yoshiki Uchida, Masahide Kuroki, and Sannamu Lee
CHARACTERISTC DIFFERENCE OF BIOLOGICAL ACTIVITY, BETWEEN ARG-CONTAINING AND LYS-CONTAINING PEPTIDES,
Peptide Science, 213-216, 2009

 

2008

Kuraoka I, Ito S, Wada T, Hayashida M, Lee L, Saijo M, Nakatsu Y, Matsumoto M, Matsunaga T, Handa H, Qin J, Nakatani Y, Tanaka K. Isolation of XAB2 complex involved in pre-mRNA splicing, transcription, and transcription-coupled repair. J Biol Chem. 2008 Jan 11;283(2):940-50. Epub 2007 Nov 2. PubMed PMID: 17981804.

 

Narumi Aoki, Hisashi Matsuo, Masanobu Deshimaru, Shigeyuki Terada
Accelerated evolution of small serum proteins (SSPs); the PSP94 family proteins in a Japanese viper,
Gene, 426, 7-14, 2008

 

Narumi Aoki, Akie Sakiyama, Kimiko Kuroki, Katsumi Maenaka, Daisuke Kohda, Masanobu Deshimaru, Shigeyuki Terada, Serotriflin, a CRISP family protein with binding affinity for small serum protein-2 in snake serum.
Biochimica et Biophysica Acta, 1784, 621-628, 2008.

 

Properties and cDNA cloning of antihemorrhagic factors in sera of Chinese and Japanese mamushi (Gloydius blomhoffi).
Narumi Aoki, Kadzuyo Tsutsumi, Masanobu Deshimaru, Shigeyuki Terada
Toxicon, 51, 251-261, 2008.

 

Hiroko Ide, Narumi Aoki, Shigeyuki Terada, Yoshiki Uchida, Masahide Kuroki, and
Sannamu Lee,
Design and Synthesis of Arg-Containing Peptides Having Various Secondary Structures and Their Biological Activities.

Peptide Science, 223-226, 2008

 

2007

Ikura T, Tashiro S, Kakino A, Shima H, Jacob N, Amunugama R, Yoder K, Izumi S, Kuraoka I, Tanaka K, Kimura H, Ikura M, Nishikubo S, Ito T, Muto A, Miyagawa K, Takeda S, Fishel R, Igarashi K, Kamiya K. DNA damage-dependent acetylation and ubiquitination of H2AX enhances chromatin dynamics. Mol Cell Biol. 2007 Oct;27(20):7028-40. Epub 2007 Aug 20. PubMed PMID: 17709392; PubMed Central PMCID: PMC2168918.

 

Narumi Aoki, Akie Sakiyama, Masanobu Deshimaru, Shigeyuki Terada Identification of novel serum proteins in a Japanese viper: homologs of mammalian PSP94.
Biochemical and Biophysical Research Communications, 359, 330-334, 2007.

 

Narumi Aoki, Masanobu Deshimaru, Shigeyuki Terada
Structural analysis of two isoforms of subunit B in phospholipase A2 inhibitor PLIγ from the serum of Habu, Trimeresurus flavoviridis.

Fukuoka Univ. Sci. Rep, 38, 47-57, 2007.